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I'm Leonardo de Oliveira Martins, a Brazilian postdoctoral researcher working in Spain on evolutionary genomics . This blog is not affiliated in any form to my employers, and all opinions are mine.Before joining the discussion, please take a look at the comment policy of the blog.
This site has moved. Its new home is at http://biomcmc.blogspot.com
Copyright
The works by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell you are free to share, copy, and modify his works as long as you accredit him and preserve this license.Labmates at Univ. of Vigo
David Posada's group at the University of Vigo, Spain
Tag Archives: MCMC
Distribution of recombination distances between trees – poster at SMBE2010
I just came back from SMBE2010, where I presented a poster about our recombination detection software and had the chance to see awesome research other people are doing. The poster can be downloaded here (1.MB in pdf format) and I’m … Continue reading
Posted in New Publications, Research Blogging
Tagged Bayesian, data, HIV-1, MCMC, recombination, tree
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arxiv – recent articles on statistics
obs: manuscripts deposited on the arxiv repository may have not been peer reviewed. Reversible jump Markov chain Monte Carlo. (arXiv:1001.2055v1 [stat.ME]) by Y Fan, S A Sisson To appear to MCMC handbook, S. P. Brooks, A. Gelman, G. Jones and … Continue reading
Posted in Abstracts, New Publications
Tagged Bayesian, consistency, graphical model, HMM, likelihood, MCMC, regression, statistics
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Molecular Biology and Evolution 2010 Volume 27, Number 2
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, by Gouy, M., Guindon, S., Gascuel, O. Molecular Biology and Evolution 2010 27(2):221-224; doi:10.1093/molbev/msp259 We present SeaView version 4, a multiplatform program designed to facilitate … Continue reading
Posted in Abstracts, New Publications
Tagged alignment, covarion, dirichlet, eukaryotes, graphical, HIV-1, likelihood, MCMC, microbe, mixture, phylodynamics, protein, software, tree
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Journal of the American Statistical Association, Volume 104, Issue 488 – December 2009
Learn From Thy Neighbor: Parallel-Chain and Regional Adaptive MCMC Radu V. Craiu, Jeffrey Rosenthal, Chao Yang. Journal of the American Statistical Association. December 1, 2009, 104(488): 1454-1466. doi:10.1198/jasa.2009.tm08393. Starting with the seminal paper of Haario, Saksman, and Tamminen (Haario, Saksman, … Continue reading
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