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I'm Leonardo de Oliveira Martins, a Brazilian postdoctoral researcher working in Spain on evolutionary genomics . This blog is not affiliated in any form to my employers, and all opinions are mine.
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CopyrightThe works by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell you are free to share, copy, and modify his works as long as you accredit him and preserve this license.
Labmates at Univ. of Vigo
Tag Archives: alignment
I am a big fan of GPU computing (and other “alternative” hardware), but it was refreshing to read this commentary by Lars Jensen, which I could summarize by this statement: You do not see anyone publishing papers with titles like … Continue reading
Despite I’m very charitable when testing my own programs, I’m not so nice when asked to scrutinize other people’s work. That’s why I was happy to see the announcement about the ALTER web server being published at Nucleic Acids Research … Continue reading
In recent years there has been an explosion of parallel algorithms for solving bioinformatics problems, namely phylogenetic reconstruction and sequence alignment. These algorithms follow the growth of new hardware solutions like Field-Programmable Gate Arrays (integrated circuits capable of performing simple … Continue reading
obs: manuscripts deposited on the arxiv repository may have not been peer reviewed. An alternative marginal likelihood estimator for phylogenetic models. (arXiv:1001.2136v1 [stat.CO]) by Serena Arima, Luca Tardella Bayesian phylogenetic methods are generating noticeable enthusiasm in the field of molecular … Continue reading
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, by Gouy, M., Guindon, S., Gascuel, O. Molecular Biology and Evolution 2010 27(2):221-224; doi:10.1093/molbev/msp259 We present SeaView version 4, a multiplatform program designed to facilitate … Continue reading
Target prediction and a statistical sampling algorithm for RNA-RNA interaction — Huang, F. W. D., Qin, J., Reidys, C. M., Stadler, P. F. 26 (2): 175 — Bioinformatics: Motivation: It has been proven that the accessibility of the target sites … Continue reading