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I'm Leonardo de Oliveira Martins, a Brazilian postdoctoral researcher working in Spain on evolutionary genomics . This blog is not affiliated in any form to my employers, and all opinions are mine.Before joining the discussion, please take a look at the comment policy of the blog.
This site has moved. Its new home is at http://biomcmc.blogspot.com
Copyright
The works by Leonardo de Oliveira Martins originally presented here are licensed under a Creative Commons Attribution-Share Alike 3.0 Unported License. In a nutshell you are free to share, copy, and modify his works as long as you accredit him and preserve this license.Labmates at Univ. of Vigo
Tag Archives: tree
Distribution of recombination distances between trees – poster at SMBE2010
I just came back from SMBE2010, where I presented a poster about our recombination detection software and had the chance to see awesome research other people are doing. The poster can be downloaded here (1.MB in pdf format) and I’m … Continue reading
Posted in New Publications, Research Blogging
Tagged Bayesian, data, HIV-1, MCMC, recombination, tree
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The specialization of novel genes
Recently a paper about the software MANTiS called my attention, and I’ve been trying to write about it for a while. This announcement at the EvolDir list seemed like the perfect opportunity. I must warn you though that I’ve never … Continue reading
Posted in Research Blogging
Tagged data, empirical likelihood, gene family, genetics, genome, gne expression, reconciliation, species, tree
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arxiv – recent articles on phylogenetics
obs: manuscripts deposited on the arxiv repository may have not been peer reviewed. An alternative marginal likelihood estimator for phylogenetic models. (arXiv:1001.2136v1 [stat.CO]) by Serena Arima, Luca Tardella Bayesian phylogenetic methods are generating noticeable enthusiasm in the field of molecular … Continue reading
Posted in Abstracts, New Publications
Tagged alignment, ancestral, BLAST, haplotype, likelihood, linguistics, parsimony, phylogenetics, protein, rearrangement, tree
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Molecular Biology and Evolution 2010 Volume 27, Number 2
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, by Gouy, M., Guindon, S., Gascuel, O. Molecular Biology and Evolution 2010 27(2):221-224; doi:10.1093/molbev/msp259 We present SeaView version 4, a multiplatform program designed to facilitate … Continue reading
Posted in Abstracts, New Publications
Tagged alignment, covarion, dirichlet, eukaryotes, graphical, HIV-1, likelihood, MCMC, microbe, mixture, phylodynamics, protein, software, tree
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